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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34929199_34931120_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34929199 - 34931120
Intron Length:
1922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTACCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATATATTT
Flanking Amino Acid:
DPSVTLELLDELTHEFLQIL
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.7
0.76
0.8
77.8
35.7
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
49.8
0.07
2
77.67
39

Associated Gene:

Gene:
CCNT2
Ensembl Gene ID:
ENSAPLG00000013992
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014600
34927488 - 34950555
23068
ENSAPLT00000043540
34927488 - 34951188
23701
ENSAPLT00000030350
34926735 - 34951188
24454
ENSAPLT00000024893
34927588 - 34952616
25029