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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34931285_34932647_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34931285 - 34932647
Intron Length:
1363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTTATC
5'SS Class:
major
3'SS Sequence:
ATTTATGCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCATTATGAAAT
Flanking Amino Acid:
AQTSYFMATNSLHLTTFCLQ
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
70.2
40.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
68.7
0.42
1
63.1
42.2
Minor 5ss
35.3
-1.7
2.9
46.2
42
Minor BPS
49
0.01
1.8
68.14
42

Associated Gene:

Gene:
CCNT2
Ensembl Gene ID:
ENSAPLG00000013992
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043540
34927488 - 34951188
23701
ENSAPLT00000030350
34926735 - 34951188
24454
ENSAPLT00000024893
34927588 - 34952616
25029
ENSAPLT00000014600
34927488 - 34950555
23068