Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34938965_34941136_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

34938965 - 34941136

Intron Length:

2172

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAGGTGGA

5'SS Class:

major

3'SS Sequence:

GGGGAAGGAAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAGGTAT

U12 Branch Point Sequence:

TAGGTATTAGGT

Flanking Amino Acid:

QEPLLDTKSDVSFLWYRWKC

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

65.3

40.8

Major BPS

49.4

-0

1.5

49.4

Major PPT

40.6

-0.5

1.1

22.9

Minor 5ss

33.1

-1.9

3.5

43.6

44.4

Minor BPS

42.2

-0.5

57.46

45.3

Associated Gene:

Gene:

CCNT2

Ensembl Gene ID:

ENSAPLG00000013992

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014600

34927488 - 34950555

23068

ENSAPLT00000043540

34927488 - 34951188

23701

ENSAPLT00000030350

34926735 - 34951188

24454

ENSAPLT00000024893

34927588 - 34952616

25029