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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34941266_34948753_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34941266 - 34948753
Intron Length:
7488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AAAAAGTTAAAT
Flanking Amino Acid:
HHSFTKFNRNIISPTALFLA
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.3
75.3
40.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
37.4
-1.4
2.6
43.2
36.7
Minor BPS
44
-0.3
2.2
60.26
42

Associated Gene:

Gene:
CCNT2
Ensembl Gene ID:
ENSAPLG00000013992
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036358
34938749 - 34951188
12440
ENSAPLT00000030350
34926735 - 34951188
24454
ENSAPLT00000024893
34927588 - 34952616
25029
ENSAPLT00000014600
34927488 - 34950555
23068
ENSAPLT00000043540
34927488 - 34951188
23701