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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34948836_34949332_R

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
34948836 - 34949332
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTATCCCGG
5'SS Class:
weak_minor
3'SS Sequence:
TCTAGTTCTCCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTCCTTAATC
Flanking Amino Acid:
LIQDMGQRLNVSQLTINTAI
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
46.9
-0.1
1.3
31
42.9
Major BPS
100
1.24
0.5
100
0
Major PPT
78.5
0.64
0.9
69.4
41.6
Minor 5ss
53.2
0.11
2.5
65
46.4
Minor BPS
85.8
1.1
1
86.11
32.2

Associated Gene:

Gene:
CCNT2
Ensembl Gene ID:
ENSAPLG00000013992
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030350
34926735 - 34951188
24454
ENSAPLT00000014600
34927488 - 34950555
23068
ENSAPLT00000043540
34927488 - 34951188
23701
ENSAPLT00000036358
34938749 - 34951188
12440