Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34955045_34963423_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34955045 - 34963423

Intron Length:

8379

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTATCACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

GTTTCTTTATCA

Flanking Amino Acid:

LRLLASVIGEDKVILGTDYP

Intron Amino Acid Position:

278

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.9

1.06

0.6

14.8

Major BPS

83.9

0.84

73.9

41.3

Major PPT

73.5

0.53

0.9

67.9

37.9

Minor 5ss

40.7

-1

57.8

46.8

Minor BPS

71.8

0.68

1.5

79.99

36.1

Associated Gene:

Gene:

ACMSD

Ensembl Gene ID:

ENSAPLG00000013859

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046274

34954467 - 34981547

27081

ENSAPLT00000014445

34954467 - 34988517

34051