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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3499049_3509494_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3499049 - 3509494
Intron Length:
10446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATGAT
U12 Branch Point Sequence:
TTTCTTTCAACA
Flanking Amino Acid:
KKRFDHSEVYTYIGSVVISI
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
85.2
25.5
Major BPS
64.5
0.36
1.1
55.4
40.3
Major PPT
84.2
0.77
0.8
81.3
29.2
Minor 5ss
36.3
-1.6
2.9
46.9
41.8
Minor BPS
65.3
0.48
1.5
76.67
34

Associated Gene:

Gene:
MYO1B
Ensembl Gene ID:
ENSAPLG00000012334
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033988
3429804 - 3509635
79832
ENSAPLT00000025498
3429804 - 3509635
79832
ENSAPLT00000024058
3429804 - 3509635
79832
ENSAPLT00000012947
3429804 - 3509635
79832