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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35005463_35058661_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35005463 - 35058661
Intron Length:
53199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTCTTTCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGATTCTAACT
Flanking Amino Acid:
VTLALAVAAFTVSVMRYSAS
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.1
0.81
0.6
85.6
21.8
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
57.8
0.32
1.7
76.75
40

Associated Gene:

Gene:
TMEM163
Ensembl Gene ID:
ENSAPLG00000024555
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030801
35000378 - 35097662
97285