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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35058706_35059819_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35058706 - 35059819
Intron Length:
1114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
GTATCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GACTTTGTATCT
Flanking Amino Acid:
RYSASSFGFAFDATLDVLSS
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.8
0.69
0.9
77.6
36.5
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
44.6
-0.3
2.1
60.65
43.5

Associated Gene:

Gene:
TMEM163
Ensembl Gene ID:
ENSAPLG00000024555
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030801
35000378 - 35097662
97285