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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35059912_35076464_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35059912 - 35076464
Intron Length:
16553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AAATTTTTAACC
Flanking Amino Acid:
AAVHSAHREYIACVILGVIF
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
88.6
0.87
0.6
84.4
23.7
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
70.4
0.62
1.1
70.46
34.2

Associated Gene:

Gene:
TMEM163
Ensembl Gene ID:
ENSAPLG00000024555
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030801
35000378 - 35097662
97285