About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35095615_35096662_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
35095615 - 35096662
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTATATATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.86
1
82.7
32.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.3
0.7
0.9
78.5
39.2
Minor 5ss
24.2
-3
4
37.3
42.5
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
TMEM163
Ensembl Gene ID:
ENSAPLG00000024555
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030801
35000378 - 35097662
97285