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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35114479_35117781_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35114479 - 35117781
Intron Length:
3303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GAATTTTTACCG
Flanking Amino Acid:
FFKGKPTLRELTSQHPYAEV
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.4
0.91
0.6
88.7
20.7
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
50.5
-0.1
1.7
53.5
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013548
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014151
35105968 - 35176718
70751