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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35117929_35124342_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35117929 - 35124342
Intron Length:
6414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGTTTTCTATTT
Flanking Amino Acid:
DLQFLLRETKLFVGLGFPYE
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89.7
0.89
0.7
88.1
28.7
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
49.5
0.05
1.9
72.55
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013548
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014151
35105968 - 35176718
70751