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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35124493_35131496_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35124493 - 35131496
Intron Length:
7004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
AAATATTTTACT
Flanking Amino Acid:
VYGKVDNFWKDKKAYLDVIH
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
73
0.52
1
65.8
40.9
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
51.8
0.14
1.8
69.54
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013548
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014151
35105968 - 35176718
70751