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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35131631_35135097_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35131631 - 35135097
Intron Length:
3467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CCATTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATGCTTTAAAA
Flanking Amino Acid:
LNPQQFYTMFPHTPDNSFLG
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
76.5
39.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.8
0.72
0.8
75.8
32.6
Minor 5ss
42.2
-0.9
2.8
59.5
38.1
Minor BPS
62.6
0.39
1.5
68.19
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013548
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014151
35105968 - 35176718
70751