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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35135232_35141298_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35135232 - 35141298
Intron Length:
6067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AAGTCTTTATTT
Flanking Amino Acid:
KTLGPSWVHYQCMLRVLDSF
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
59.9
0.39
1.6
71.12
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013548
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014151
35105968 - 35176718
70751