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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35158294_35171515_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35158294 - 35171515
Intron Length:
13222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
TAAAACAAAATT
Flanking Amino Acid:
LGAVEKLNVADLINGAQEQC
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
83.5
0.75
0.7
82.1
30
Minor 5ss
32.5
-2
3.1
41.1
45.5
Minor BPS
43.5
-0.4
2
61.21
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013548
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014151
35105968 - 35176718
70751