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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35171687_35176326_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35171687 - 35176326
Intron Length:
4640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCGTG
5'SS Class:
major
3'SS Sequence:
TTTTCACTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTAAGCATAACT
Flanking Amino Acid:
GPYVGTVTAYDLKKTLAVLL
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
67.4
44
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.4
0.84
0.7
81.3
29.6
Minor 5ss
40.4
-1.1
3.4
56.3
47.9
Minor BPS
54.8
0.23
2.1
79
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013548
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014151
35105968 - 35176718
70751