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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35257607_35258229_F

Intron Information:

Intron Rank:
124931
Intron Class:
major
Intron Phase:
Intron Coordinates:
35257607 - 35258229
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCATTGATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TCTGCATTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
67
0.38
1.1
58
46.5
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
55.4
0.15
1.7
66.36
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017279
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039755
35256881 - 35260862
3982
ENSAPLT00000023091
35257320 - 35260862
3543