Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35258325_35259757_F

Intron Information:

Intron Rank:

124932

Intron Class:

major

Intron Phase:

Intron Coordinates:

35258325 - 35259757

Intron Length:

1433

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTGAT

5'SS Class:

major

3'SS Sequence:

TCTCTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTATTAG

U12 Branch Point Sequence:

AGCCCTCTATTA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

74.7

35.4

Major BPS

49.4

-0

1.6

49.4

44.5

Major PPT

85.8

0.81

0.7

80.7

24.4

Minor 5ss

37.3

-1.4

3.4

45.5

Minor BPS

-0.5

1.8

48.43

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017279

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039755

35256881 - 35260862

3982

ENSAPLT00000023091

35257320 - 35260862

3543