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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35298258_35346135_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
35298258 - 35346135
Intron Length:
47878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
72.7
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.6
-1.4
2.8
48.4
41.7
Minor BPS
58.5
0.34
1.6
71.82
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013464
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020265
35297366 - 35689082
391717