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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35359623_35552539_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35359623 - 35552539
Intron Length:
192917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAGTA
5'SS Class:
major
3'SS Sequence:
TTTCATTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTTACATAAAT
Flanking Amino Acid:
SGIQDRWRSLRMEETVRNLL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
70.2
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.8
74.1
36.3
Minor 5ss
39.4
-1.2
3.5
55.5
48.7
Minor BPS
53.2
0.18
1.9
74.1
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013464
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014022
35359579 - 35689082
329504