Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35397503_35442357_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35397503 - 35442357

Intron Length:

44855

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGCTG

5'SS Class:

major

3'SS Sequence:

TTTTTTCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAA

U12 Branch Point Sequence:

GAAGAAATAACT

Flanking Amino Acid:

LHGSPSLLLKEYMDSNKYIE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

1.1

64.3

47.1

Major BPS

74.8

0.62

39.8

Major PPT

93.1

0.97

0.5

93.2

15.7

Minor 5ss

-1.9

3.6

46.2

49.1

Minor BPS

42.8

-0.4

58.8

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013464

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035413

35397428 - 35689082

291655