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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35428597_35442357_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
35428597 - 35442357
Intron Length:
13761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
GAAGAAATAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.9
38.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
34.5
-1.8
3.3
49
47.2
Minor BPS
42.8
-0.4
2
58.8
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013464
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044729
35428260 - 35689082
260823