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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35442432_35477727_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35442432 - 35477727
Intron Length:
35296

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATGCTATTCACA
Flanking Amino Acid:
QLEEQRWNLWREKLSVARLQ
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.2
23.6
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
83.8
0.76
0.6
81.1
23.9
Minor 5ss
25.7
-2.8
3.6
34.4
41.2
Minor BPS
46.8
-0.2
2
59.96
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013464
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044729
35428260 - 35689082
260823
ENSAPLT00000035413
35397428 - 35689082
291655
ENSAPLT00000025732
35346136 - 35689082
342947
ENSAPLT00000020265
35297366 - 35689082
391717
ENSAPLT00000047978
35327040 - 35689082
362043