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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3549574_3551455_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3549574 - 3551455
Intron Length:
1882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGAATA
5'SS Class:
major
3'SS Sequence:
ACTTTTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTCTCAATC
Flanking Amino Acid:
LLAQWIESQDWEAASNNEAM
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
73.5
37.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.5
0.64
0.8
70.7
35.5
Minor 5ss
35.8
-1.6
3.3
45.4
44
Minor BPS
67.7
0.53
1.5
75.08
35.4

Associated Gene:

Gene:
STAT4
Ensembl Gene ID:
ENSAPLG00000023296
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042337
3549422 - 3585297
35876