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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_355736_357725_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
355736 - 357725
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TATTTCTCAATT
Flanking Amino Acid:
KEWNMTGKKKNNRRKRSKSK
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.2
0.61
0.8
75
33.5
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
71.6
0.76
1.4
85.18
35.1

Associated Gene:

Gene:
SPATS2L
Ensembl Gene ID:
ENSAPLG00000008552
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008896
334741 - 359689
24949