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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35603868_35624088_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35603868 - 35624088
Intron Length:
20221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCCCACCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCCCTTCTAACC
Flanking Amino Acid:
VKPASDLLLQKLHSRILDLS
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
64
0.32
0.8
53.5
30.7
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
49.7
-0
1.7
59.44
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013464
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020265
35297366 - 35689082
391717
ENSAPLT00000018236
35477728 - 35708030
230303
ENSAPLT00000047978
35327040 - 35689082
362043
ENSAPLT00000014022
35359579 - 35689082
329504
ENSAPLT00000044729
35428260 - 35689082
260823
ENSAPLT00000035413
35397428 - 35689082
291655