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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35603868_35627340_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35603868 - 35627340
Intron Length:
23473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATATTTCTATTT
Flanking Amino Acid:
VKPASDLLLQECQQNVKSSI
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.4
0.57
0.9
73
37
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
47.7
-0
1.8
67.16
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013464
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025732
35346136 - 35689082
342947