Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35624194_35627340_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35624194 - 35627340

Intron Length:

3147

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTGAGTTTT

5'SS Class:

major

3'SS Sequence:

TCTCATGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

ATATTTCTATTT

Flanking Amino Acid:

QSRTADAQIHECQQNVKSSI

Intron Amino Acid Position:

207

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.2

83.9

30.3

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

75.4

0.57

0.9

Minor 5ss

42.1

-0.9

57.4

40.7

Minor BPS

47.7

-0

1.8

67.16

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013464

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035413

35397428 - 35689082

291655

ENSAPLT00000020265

35297366 - 35689082

391717

ENSAPLT00000018236

35477728 - 35708030

230303

ENSAPLT00000047978

35327040 - 35689082

362043

ENSAPLT00000014022

35359579 - 35689082

329504

ENSAPLT00000044729

35428260 - 35689082

260823