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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3563865_3565363_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3563865 - 3565363
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTGT
5'SS Class:
major
3'SS Sequence:
TCTCCTGGGAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
ACCCAAGTAATT
Flanking Amino Acid:
KVSAIKNSAQMTDQDVKYLE
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.3
38.2
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
51.9
0.04
1.2
54.6
39.4
Minor 5ss
48.1
-0.2
2.5
67.9
42.9
Minor BPS
40
-0.6
2.2
53.67
41.8

Associated Gene:

Gene:
STAT4
Ensembl Gene ID:
ENSAPLG00000023296
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042337
3549422 - 3585297
35876