Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35709086_35779122_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35709086 - 35779122

Intron Length:

70037

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGATCC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTGTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTGAC

U12 Branch Point Sequence:

TATTCTGTGACT

Flanking Amino Acid:

SSRRQITLFLGLIVATLAIC

Intron Amino Acid Position:

289

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

69.5

36.3

Major BPS

0.22

1.2

52.4

43.3

Major PPT

81.4

0.71

0.9

75.8

38.1

Minor 5ss

38.8

-1.3

43.3

Minor BPS

62.9

0.49

83.72

37.5

Associated Gene:

Gene:

GPR39

Ensembl Gene ID:

ENSAPLG00000013436

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013982

35708571 - 35780135

71565