About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3572913_3572994_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3572913 - 3572994
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTCCTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATGTCCTCCATA
Flanking Amino Acid:
ATIDKNVSTVSNRRFVLCGT
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
68.2
0.41
0.8
62.3
34.1
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
51.3
0.03
2
65.81
41.1

Associated Gene:

Gene:
STAT4
Ensembl Gene ID:
ENSAPLG00000023296
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042337
3549422 - 3585297
35876