Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3573089_3573886_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3573089 - 3573886

Intron Length:

798

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TTGCTTTATACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTTAT

U12 Branch Point Sequence:

TTTTGCTTTATA

Flanking Amino Acid:

GSLSVEFRHLQPKEMKSSAG

Intron Amino Acid Position:

411

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.8

80.5

34.9

Major BPS

66.1

0.4

1.3

59.6

46.8

Major PPT

81.1

0.7

0.9

76.6

36.7

Minor 5ss

-0.7

2.8

55.1

43.4

Minor BPS

62.3

0.38

2.1

79.05

37.5

Associated Gene:

Gene:

STAT4

Ensembl Gene ID:

ENSAPLG00000023296

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042337

3549422 - 3585297

35876