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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3576479_3577228_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3576479 - 3577228
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
GCAGCATTTACC
Flanking Amino Acid:
CLYGLTINLETSSLPVVMIS
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
66.4
0.41
1
59
37.6
Major PPT
89.7
0.89
0.6
82.1
29.9
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
46
-0.3
2
53.36
43.8

Associated Gene:

Gene:
STAT4
Ensembl Gene ID:
ENSAPLG00000023296
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042337
3549422 - 3585297
35876