About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_357776_359580_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
357776 - 359580
Intron Length:
1805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTGTTGAAAT
Flanking Amino Acid:
MDGSATQVLKEW
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83
0.74
0.7
77.4
31.3
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
57.7
0.32
2
82.05
39.3

Associated Gene:

Gene:
SPATS2L
Ensembl Gene ID:
ENSAPLG00000008552
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008896
334741 - 359689
24949