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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3578385_3579521_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3578385 - 3579521
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
QLNMLAEKLMGQQVSYNDYQ
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.3
0.79
0.7
78.4
35.6
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
STAT4
Ensembl Gene ID:
ENSAPLG00000023296
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042337
3549422 - 3585297
35876