Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3580466_3580915_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3580466 - 3580915

Intron Length:

450

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGCAAC

5'SS Class:

major

3'SS Sequence:

TGTCACACTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGCAA

U12 Branch Point Sequence:

TTTTGCAAAAGT

Flanking Amino Acid:

KKHILPLWIDGYVMGFVSKE

Intron Amino Acid Position:

581

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

68.4

38.7

Major BPS

65.8

0.39

1.4

77.7

37.1

Major PPT

66.9

0.38

0.9

59.3

36.6

Minor 5ss

33.8

-1.8

2.8

34.7

41.5

Minor BPS

46.2

-0.2

2.5

76.44

Associated Gene:

Gene:

STAT4

Ensembl Gene ID:

ENSAPLG00000023296

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042337

3549422 - 3585297

35876