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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35813694_35814560_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
35813694 - 35814560
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
GCACTGGTAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.9
34.5
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
85.4
0.8
0.6
85.2
22.2
Minor 5ss
49.2
-0
2.5
63.9
47.7
Minor BPS
41.6
-0.5
2.5
58.23
44.6

Associated Gene:

Gene:
SLC35F5
Ensembl Gene ID:
ENSAPLG00000013162
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013720
35812734 - 35838819
26086