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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35814650_35815088_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35814650 - 35815088
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTAATTTAAAT
Flanking Amino Acid:
AFICRKHRIQRMPEESEQCE
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
62.5
43.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.1
0.65
1
83.4
32
Minor 5ss
29.9
-2.3
3.3
37.9
47
Minor BPS
58.8
0.35
1.7
76.19
39.7

Associated Gene:

Gene:
SLC35F5
Ensembl Gene ID:
ENSAPLG00000013162
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013720
35812734 - 35838819
26086