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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35815244_35819423_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35815244 - 35819423
Intron Length:
4180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGTGTCTTAATT
Flanking Amino Acid:
SIIADMCMQKVQFSWLFFAG
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
71.9
34
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
76.3
0.59
0.9
66.8
43
Minor 5ss
37.1
-1.5
3.3
49.8
46.8
Minor BPS
73.7
0.82
1.3
83.97
37.3

Associated Gene:

Gene:
SLC35F5
Ensembl Gene ID:
ENSAPLG00000013162
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013720
35812734 - 35838819
26086