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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3581664_3582796_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3581664 - 3582796
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGGCTC
5'SS Class:
major
3'SS Sequence:
CATTGATTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATATCTCTAACA
Flanking Amino Acid:
GKHYSCQPNEVSKPSDGGVK
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.3
59.9
44.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.8
0.54
0.9
70.3
40
Minor 5ss
30.3
-2.3
3.5
41.7
45.1
Minor BPS
66.1
0.5
1.6
75.63
35.1

Associated Gene:

Gene:
STAT4
Ensembl Gene ID:
ENSAPLG00000023296
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042337
3549422 - 3585297
35876