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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35822369_35822780_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35822369 - 35822780
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTACTTAATG
Flanking Amino Acid:
EDKLDIPMFFGFVGLFNLLL
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.6
0.64
0.9
77.8
34.6
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
72.7
0.57
1.5
75.01
36.8

Associated Gene:

Gene:
SLC35F5
Ensembl Gene ID:
ENSAPLG00000013162
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013720
35812734 - 35838819
26086