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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35822886_35823218_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35822886 - 35823218
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTCACT
5'SS Class:
major
3'SS Sequence:
TTCATCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATGACTTAAAT
Flanking Amino Acid:
SEKSPGRDTIGSLWSLVGAM
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
69.9
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
85.5
0.8
0.8
79.8
32.2
Minor 5ss
48.2
-0.2
2.5
67.7
42.9
Minor BPS
56.1
0.27
1.8
71.52
44.7

Associated Gene:

Gene:
SLC35F5
Ensembl Gene ID:
ENSAPLG00000013162
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013720
35812734 - 35838819
26086