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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35827586_35829111_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35827586 - 35829111
Intron Length:
1526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGATTCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCCTGCTTAACT
Flanking Amino Acid:
TTDNAVNSSLSEPLYVPVKF
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
78.1
0.63
0.9
74.7
39.7
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
71
0.74
1.8
83.36
44

Associated Gene:

Gene:
SLC35F5
Ensembl Gene ID:
ENSAPLG00000013162
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013720
35812734 - 35838819
26086