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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35831456_35832596_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35831456 - 35832596
Intron Length:
1141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAT
U12 Branch Point Sequence:
TTTCTTTCCACA
Flanking Amino Acid:
IWVASSELTSYVFTKYNKPF
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
71.4
0.53
1.4
71.4
45.1
Major PPT
87.8
0.85
0.6
83.8
24.5
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
49
-0
1.9
68.33
38.3

Associated Gene:

Gene:
SLC35F5
Ensembl Gene ID:
ENSAPLG00000013162
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013720
35812734 - 35838819
26086