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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35866556_35869072_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
35866556 - 35869072
Intron Length:
2517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTGCTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTTGCTTTAATA
Flanking Amino Acid:
IRDLENPACPRYTKLGYAGN
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
72.1
39.9
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
76.8
0.6
0.9
73.8
35.6
Minor 5ss
65.1
0.51
2.7
81.8
38.5
Minor BPS
77.4
0.86
1.2
82.68
32.7

Associated Gene:

Gene:
ACTR3
Ensembl Gene ID:
ENSAPLG00000012845
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031477
35854503 - 35882905
28403