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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35873250_35873790_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35873250 - 35873790
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAGAG
5'SS Class:
major
3'SS Sequence:
TTTTCTATAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTATAACA
Flanking Amino Acid:
AIEKPTYATKWPIRHGIVED
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.2
58.6
40.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.8
0.72
0.9
78.4
33.4
Minor 5ss
41.4
-1
3.3
55.2
49
Minor BPS
77.3
0.85
1.5
88.36
28.3

Associated Gene:

Gene:
ACTR3
Ensembl Gene ID:
ENSAPLG00000012845
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031477
35854503 - 35882905
28403
ENSAPLT00000019658
35871149 - 35882905
11757
ENSAPLT00000013405
35855826 - 35882905
27080
ENSAPLT00000039461
35854503 - 35884925
30423