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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35873902_35875381_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35873902 - 35875381
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGTAAATAAATT
Flanking Amino Acid:
AEPEDHYFLLTEPPLNTPEN
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
82.4
0.73
0.8
76.9
32
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
46.2
-0.2
2.1
67.96
42.5

Associated Gene:

Gene:
ACTR3
Ensembl Gene ID:
ENSAPLG00000012845
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039461
35854503 - 35884925
30423
ENSAPLT00000031477
35854503 - 35882905
28403
ENSAPLT00000019658
35871149 - 35882905
11757
ENSAPLT00000013405
35855826 - 35882905
27080