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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35880851_35882349_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35880851 - 35882349
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
AATTATTTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
SEELSGGRLKPKPIDVQVIT
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.6
30.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.2
0.59
0.9
69.8
40.4
Minor 5ss
39.2
-1.2
2.7
51.6
44.8
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
ACTR3
Ensembl Gene ID:
ENSAPLG00000012845
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039461
35854503 - 35884925
30423
ENSAPLT00000031477
35854503 - 35882905
28403
ENSAPLT00000019658
35871149 - 35882905
11757
ENSAPLT00000013405
35855826 - 35882905
27080